PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G154100.1
Common NameB456_010G154100, LOC105772413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 179aa    MW: 20268.9 Da    PI: 9.4186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G154100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.4e-111461655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                        + +Er+RR +++  +++L +l+P+    +s+   s  + L +A++YIksL+
  Gorai.010G154100.1 14 KFIERNRRIQMKALYSKLNSLVPHH---TSREaISLPDQLDEATNYIKSLK 61
                        669*********************8...66666****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-12876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.287860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-51065No hitNo description
Gene3DG3DSA:4.10.280.108.9E-111178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-41466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-71560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEINNPNPSK MDRKFIERNR RIQMKALYSK LNSLVPHHTS REAISLPDQL DEATNYIKSL  60
KANLERMKEM KDGLRGLVER ANTSRSYGSK SPQIQIQEIG SSLAIALNTG FNSQFIFNET  120
IRIVHEERVE VVNANFSVVD DDTVFHTIHL TIGEPSAAAR ISQRLNKFVH DVDASNKY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449139.11e-130PREDICTED: transcription factor bHLH36-like
TrEMBLA0A0D2UFB61e-130A0A0D2UFB6_G
STRINGPOPTR_0011s05320.12e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-36bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]